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2:15 Chairperson’s Remarks
Erik Flemington, Ph.D., Professor, Pathology, Tulane Health Sciences Center; Professor, Cancer Research, Program Leader, Cancer Genetics program, Tulane Cancer Center
2:20 RNA-Seq in Solving Real World Biological Problems
Erik Flemington, Ph.D., Professor, Pathology, Tulane Health Sciences Center; Professor, Cancer Research, Program Leader, Cancer Genetics program, Tulane Cancer Center
2:50 Integrating Short, Long, and Paired-End Sequencing to Study Dynamic Transcriptomes During Neural Differentiation of Human Embryonic Stem Cells
Jiaqian Wu, Ph.D., Postdoctoral Research Fellow, Genetics, Stanford University School of Medicine
Sponsored by
3:20 Multi-Layer and Integrative Analysis of the Whole Transcriptome in Gastric Cancer
Han Liang, Ph.D., Assistant Professor, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center
3:50 Networking Refreshment Break in Exhibit Hall with Poster Viewing
4:30 The Transcriptome of the Human Pathogen Trypanosoma brucei at Single-Nucleotide Resolution
Christian Tschudi, Ph.D., Associate Professor, Epidemiology of Microbial Diseases, Yale University
5:00 Widespread and Unexpected Effects of RDR2 Mutation on the Expression of Transposons, Genes and 24 NT Small RNAs
Yi Jia, Ph.D., Postdoctoral Associate, Department of Plant Breeding and Genetics, Cornell University
5:30 Evening Reception
6:30 Close of Day
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2:15 Chairperson’s Remarks
Thomas Schwei, Vice President and General Manager, DNASTAR, Inc.
2:20 ChIP-PaM: An Algorithm for Identifying Transcription Factor Targets through ChIP-Seq Data
Song Wu, Ph.D., Assistant Member, Biostatistics, St. Jude Children’s Research Hospital
2:50 An Integrated Pipeline for Analyzing ChIP-Seq Transcription Factor Datasets
Gordon Robertson, Ph.D., Staff Scientist, Canada’s Michael Smith Genome Sciences Centre, British Columbia Cancer Agency
3:20 BiNGS!SL-Seq: Computational Analytical Pipeline to Analyze and Interpret Genome-Wide Synthetic Lethal Screen
Aik Choon Tan, Ph.D., Assistant Professor, Bioinformatics, Medical Oncology, University of Colorado Denver School of Medicine
3:50 Networking Refreshment Break in Exhibit Hall with Poster Viewing
4:30 RNA Binding Networks Determined by CLIP-SeqGene Yeo, Ph.D., Assistant Professor, Cellular and Molecular Medicine, Institute for Genomic Medicine, University of California, San Diego
5:00 Analysis of High-Resolution and Genome-Scale DNA Methylation DataElena Harris, Ph.D., Research Associate, Molecular and Computational Biology, University of Southern California
5:30 Evening Reception
6:30 Close of Day
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2:15 Chairperson’s Remarks
Matthew Hudson, Ph.D., Associate Professor, Department of Crop Sciences, Institute for Genomic Biology, Energy Biosciences Institute, University of Illinois, Urbana
Featured Speaker
2:20 Comparative Genomics of Plant-Pathogen Interactions
Richard Michelmore, Ph.D., Professor and Director, The Genome Center, University of California, Davis
2:50 Using Sequencing for Biofuel Crop Improvement
Matthew Hudson, Ph.D., Associate Professor, Department of Crop Sciences, Institute for Genomic Biology, Energy Biosciences Institute, University of Illinois, Urbana
3:20 RNA-Seq Atlas of Glycine Max: A Guide to the Soybean TranscriptomeGregory May, President, National Center for Genome Resources
3:50 Refreshment Break in Exhibit Hall
4:30 Use of High-Throughput Sequencing to Identify Transposon Insertions Underlying Mutant Phenotypes in High-Copy Mutator Lines of Maize
Alice Barkan, Ph.D., Professor, Biology, Institute of Molecular Biology, University of Oregon
5:00 SNP Discovery by High Throughput Sequencing in Soybean
Trupti Joshi, Plant Sciences, University of Missouri, Columbia
5:30 Evening Reception
6:30 Close of Day
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